PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G28080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 348aa    MW: 39727.5 Da    PI: 8.7013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G28080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-071437126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+lC  +++ G+C++ ++C+FaHg
  ONIVA06G28080.1 14 YKTKLCALWRQ-GECNR-ASCSFAHG 37
                     9**********.*****.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-11842IPR000571Zinc finger, CCCH-type
SMARTSM003560.00231338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3241339IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-51437IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGQPPRSPF PPRGGPGRRD  60
HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR HRKKLEGGKT  120
NSSESLNSSD NEDRKKDDRF NKADDKHDNE AQLQRIQLDM EALHEEKSSL EVILNGKINE  180
ASKLSSRIAD LESQLNDEKE ACERSQARFE RFADLLASDT LKPCSKDQGS SAAKEDPYNA  240
YEMSPSDQRQ NHETTRKRSV ALSTSEEGRN GKKRRESYDN RDPMSEKYRP EDALEPFQSS  300
KGTEAKELLS VKKNLGDGDN NEKGNVVSSA NVFTDRYEGG DDDDVLVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255274RKRSVALSTSEEGRNGKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648160.0AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644053.10.0PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X1
SwissprotQ6H7U22e-90C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A0E0HUL50.0A0A0E0HUL5_ORYNI; Uncharacterized protein
STRINGLOC_Os06g46890.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-06C3H family protein